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[[Single Turnover Chlorophyll Fluorescence]]<br> | [[Single Turnover Chlorophyll Fluorescence]]<br> | ||
[[NifH amplicon sequence]]<br> | [[NifH amplicon sequence]]<br> | ||
[[ | [[Net community production (NCP) - O₂/Ar]]<br> | ||
[[PISCES]]<br> | [[PISCES]]<br> | ||
[[CMIP]]<br> | [[CMIP]]<br> | ||
[[Proteome Allocation Models]] | [[Proteome Allocation Models]] | ||
== Origin Story & Mission == | == Origin Story & Mission == | ||
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=== [[Data Types]] === | === [[Data Types]] === | ||
==== Primary Production ==== | ==== Primary Production ==== | ||
[[Photoautotrophy]] | [[Nitrogen Fixation]] | [[Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | [[Photoautotrophy]] | [[Nitrogen Fixation]] | [[Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | ||
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=== [[Model Types]] === | === [[Model Types]] === | ||
==== [[Cellular scale]] ==== | ==== [[Cellular scale]] ==== | ||
[[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | [[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | ||
Latest revision as of 21:29, 4 June 2026
While still under development, these are some of the exciting entries on models and measurements recently added by community members:
Respiration from oxygen consumption: optodes
Single Turnover Chlorophyll Fluorescence
NifH amplicon sequence
Net community production (NCP) - O₂/Ar
PISCES
CMIP
Proteome Allocation Models
Origin Story & Mission
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRiMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically:
- defining key terms used across disciplines
- explain types of data generated by different methods, assumptions, and potential biases
- describe different types of models, required data inputs, computational demand, and limitations
Content
OceanWiki is an encyclopedia of marine biogeochemistry, and consists of three components:
A dictionary with definitions from both experimentalists, observationalists, and modelers.
Primary Production
Photoautotrophy | Nitrogen Fixation | Phytoplankton C/N-Based Growth Rates | Chemoautotrophy
Secondary Production
Enzyme Activity | Growth Rate | Respiration
Nutrient Fluxes
Nitrogen | Phosphorous | Sulfur | Trace Metals | Biomineralization
Interactions
Grazing | Mixotrophy | Viruses | Allelopathy | Life cycles
Flux Balance Analysis | Proteome Allocation Models | Particle Simulation | Bio Particle Simulation
Community Flux Balance Analysis | GENOME
CMIP | MARBL | Darwin | AWESOME-OCIM | PISCES
Teaching material
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).